README
¶
biostuff
Computational biology packages for Go, with emphasis on minimialism.
go get github.com/fluhus/biostuff/...
Package Overview
- Data formats
- Algorithms & data structures
- Nucleotide & amino-acid sequence utilities
Help or Get Help
Found a bug? Got feedback? Questions? Feel free to open an issue and let me know!
Directories
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| Path | Synopsis |
|---|---|
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Package align provides functionality for aligning sequences.
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Package align provides functionality for aligning sequences. |
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genncbi
command
Command genncbi generates substitution matrices from NCBI text files.
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Command genncbi generates substitution matrices from NCBI text files. |
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formats
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bed
Package bed decodes and encodes BED files.
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Package bed decodes and encodes BED files. |
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fasta
Package fasta decodes and encodes fasta files.
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Package fasta decodes and encodes fasta files. |
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fastq
Package fastq decodes and encodes fastq files.
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Package fastq decodes and encodes fastq files. |
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genbank
Package genbank provides parsing for GenBank data.
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Package genbank provides parsing for GenBank data. |
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newick
Package newick decodes and encodes Newick-formatted trees.
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Package newick decodes and encodes Newick-formatted trees. |
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sam
Package sam decodes and encodes SAM files.
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Package sam decodes and encodes SAM files. |
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smtext
Package smtext handles text representations of substitution matrices.
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Package smtext handles text representations of substitution matrices. |
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Package mash provides sequence MinHashing and Mash distance calculation.
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Package mash provides sequence MinHashing and Mash distance calculation. |
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v2
Package mash provides sequence MinHashing and Mash distance calculation.
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Package mash provides sequence MinHashing and Mash distance calculation. |
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Package rarefy provides rarefaction curve generation.
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Package rarefy provides rarefaction curve generation. |
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Package regions provides an index for searching on intervals.
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Package regions provides an index for searching on intervals. |
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Package sequtil provides functions for processing genetic sequences.
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Package sequtil provides functions for processing genetic sequences. |
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